Publications by Infectious Diseases Division Members

Hauser N, Conlon KC, Desai A, Kobziar LN. Climate Change and Infections on the Move in North America. Infect Drug Resist. 2021 Dec 30;14:5711-5723. doi: 10.2147/IDR.S305077. PMID: 35002262; PMCID: PMC8722568.

Desai AN, Nouvellet P, Bhatia S, Cori A, Lassmann B. Data journalism and the COVID-19 pandemic: opportunities and challenges. Lancet Digit Health. 2021 Oct;3(10):e619-e621. doi: 10.1016/S2589-7500(21)00178-3. PMID: 34556290; PMCID: PMC8452266.

Millar JA, Dao HDN, Stefopulos ME, Estevam CG, Fagan-Garcia K, Taft DH, Park C, Alruwaily A, Desai AN, Majumder MS. Risk factors for increased COVID-19 case-fatality in the United States: A county-level analysis during the first wave. PLoS One. 2021 Oct 14;16(10):e0258308. doi: 10.1371/journal.pone.0258308. PMID: 34648525; PMCID: PMC8516194.

Maniar A, Sarkar S, Godbout R, Raychaudhuri SP. Disseminated Cat-Scratch Disease in a Patient With Rheumatoid Arthritis on Rituximab. J Clin Rheumatol. 2021 Aug 1;27(5):e164-e165. doi: 10.1097/RHU.0000000000001305. PMID: 32040054.

Malinis M, Koff A. Mycobacterium tuberculosis in solid organ transplant donors and recipients. Curr Opin Organ Transplant. 2021 Aug 1;26(4):432-439. doi: 10.1097/MOT.0000000000000885. PMID: 34074939.

Reddy AK, Chakrabarty M, Liu Y, Cohen SH, Maniar AH. Case Report: Clonorchis sinensis Infection Associated with Eosinophilic Pneumonia. Am J Trop Med Hyg. 2021 May 3;104(6):2065-2068. doi: 10.4269/ajtmh.20-0632. PMID: 33939634; PMCID: PMC8176514.

Bhatia S, Lassmann B, Cohn E, Desai AN, Carrion M, Kraemer MUG, Herringer M, Brownstein J, Madoff L, Cori A, Nouvellet P. Using digital surveillance tools for near real-time mapping of the risk of infectious disease spread. NPJ Digit Med. 2021 Apr 16;4(1):73. doi: 10.1038/s41746-021-00442-3. PMID: 33864009.

Hauser N, Kim JJ, Luethy PM, Schmalzle SA, Bork JT. Multicenter retrospective cohort study of the clinical significance of Staphylococcus lugdunensis isolated from a single blood culture set. Diagn Microbiol Infect Dis. 2021 Mar;99(3):115261. doi: 10.1016/j.diagmicrobio.2020.115261. Epub 2020 Nov 6. PMID: 33290922.

Hull TD, Levine J, Bantilan N, Desai AN, Majumder MS. Analyzing Digital Evidence From a Telemental Health Platform to Assess Complex Psychological Responses to the COVID-19 Pandemic: Content Analysis of Text Messages. JMIR Form Res. 2021 Feb 9;5(2):e26190. doi: 10.2196/26190. PMID: 33502999.

Hauser N, Gushiken AC, Narayanan S, Kottilil S, Chua JV. Evolution of Nipah Virus Infection: Past, Present, and Future Considerations. Trop Med Infect Dis. 2021 Feb 14;6(1):24. doi: 10.3390/tropicalmed6010024. PMID: 33672796.

Marcelin JR, Cortés-Penfield N, Del Rio C, Desai AN, Echenique I, Granwehr B, Lawal F, Kuriakose K, Lee DH, Malinis M, Ruidera D, Siddiqui J, Spec A, Swartz TH. How the Field of Infectious Diseases Can Leverage Digital Strategy and Social Media Use During a Pandemic. Open Forum Infect Dis. 2021 Jan 19;8(2):ofab027. doi: 10.1093/ofid/ofab027. PMID: 33634204.

Tarnas MC, Desai AN, Lassmann B, Abbara A. Increase in vector-borne disease reporting affecting humans and animals in Syria and neighboring countries after the onset of conflict: A ProMED analysis 2003-2018. Int J Infect Dis. 2021 Jan;102:103-109. doi: 10.1016/j.ijid.2020.09.1453. Epub 2020 Sep 28. PMID: 33002614.

Doanvo A, Qian X, Ramjee D, Piontkivska H, Desai AN, Majumder M. Machine Learning Maps Research Needs in COVID-19 Literature. Patterns (N Y). 2020 Dec 11;1(9):100123. doi: 10.1016/j.patter.2020.100123. Epub 2020 Sep 16. PMID: 32959032.

Davis MW, McManus D, Koff A, et al. Repurposing antimicrobial stewardship tools in the electronic medical record for the management of COVID-19 patients. Infect Control Hosp Epidemiol. 2020 Nov;41(11):1335-1337. doi: 10.1017/ice.2020.281. Epub 2020 Jun 8. PMID: 32507113.

Koff AG, Laurent-Rolle M, Hsu JC, Malinis M. Prolonged incubation of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in a patient on rituximab therapy. Infect Control Hosp Epidemiol. 2020 Oct 7:1-2. doi: 10.1017/ice.2020.1239. Epub ahead of print. PMID: 33023685.

Livingston E, Desai AN, Berkwits M. Sourcing Personal Protective Equipment During the COVID-19 Pandemic. JAMA. 2020 May 19;323(19):1912-1914. doi: 10.1001/jama.2020.5317. PMID: 32221579.

Hauser N, Luethy PM, Rapaka RR. An Immunocompromised Woman with a Brain Lesion. Am J Med. 2020 Sep;133(9):e516-e517. doi: 10.1016/j.amjmed.2020.02.021. Epub 2020 Mar 19. PMID: 32199814.

Hauser N, Luethy PM, Stamatos N. Listeria Meningitis: An Inconsistent Organism Causing an Inconsistent Disease. Am J Med. 2021 Jan;134(1):e64-e65. doi: 10.1016/j.amjmed.2020.06.028. Epub 2020 Jul 24. PMID: 32717187.

Price CC, Altice FL, Shyr Y, Koff A, et al. Tocilizumab Treatment for Cytokine Release Syndrome in Hospitalized Patients With Coronavirus Disease 2019: Survival and Clinical Outcomes. Chest. 2020 Oct;158(4):1397-1408. doi: 10.1016/j.chest.2020.06.006. Epub 2020 Jun 15. PMID: 32553536.

Wilder B, Charpignon M, Killian JA, Ou H-C, Mate A, Jabbari S, Perrault A, Desai AN, Tambe M, Majumder MS. The Role Of Age Distribution And Family Structure On Covid-19 Dynamics: A Preliminary Modeling Assessment For Hubei And Lombardy, in SSRN. ; 2020.

Rivera JM, Gupta S, Ramjee D, El Hayek GY, El Amiri N, Desai AN, Majumder MS. Evaluating interest in off-label use of disinfectants for COVID-19. Lancet Digit Health. 2020 Nov;2(11):e564-e566. doi: 10.1016/S2589-7500(20)30215-6. Epub 2020 Sep 28. PMID: 33015597.

Desai AN, Ramatowski JW, Marano N, Madoff LC, Lassmann B. Infectious disease outbreaks among forcibly displaced persons: an analysis of ProMED reports 1996-2016. Confl Health. 2020 Jul 22;14:49. doi: 10.1186/s13031-020-00295-9. PMID: 32704307; PMCID: PMC7374653.

Koff A, Malinis M. Chest Pain and a Cavitary Lung Mass in a Woman With Diabetes. JAMA. 2020 Jun 16;323(23):2421-2422. doi: 10.1001/jama.2020.4111. PMID: 32442247.

Sarwar S, Koff A, Malinis M, Azar MM. Daptomycin perioperative prophylaxis for the prevention of vancomycin-resistant Enterococcus infection in colonized liver transplant recipients. Transpl Infect Dis. 2020 Jun;22(3):e13280. doi: 10.1111/tid.13280. Epub 2020 Apr 11. PMID: 32216015.

Desai AN, Seshasayee SM, Majumder MS, Lassmann B, Madoff LC, Cohn EL, Brownstein JS. Tuberculosis and foreign-born populations in the United States: A mixed methods pilot study of media reporting and political identification. PLoS One. 2020 Apr 21;15(4):e0230967. doi: 10.1371/journal.pone.0230967. PMID: 32315312; PMCID: PMC7173792.

Truong T, Penn BH. An M. tuberculosis Metabolic Enzyme Moonlights as an Anti-Inflammatory Effector Protein. Cell Host Microbe. 2020 Mar 11;27(3):310-312. doi: 10.1016/j.chom.2020.02.012. PMID: 32164839.

Mitra A, Dwyre DM, Schivo M, Thompson GR III, Cohen SH, et al. Leukoerythroblastic reaction in a patient with COVID-19 infection [published online ahead of print, 2020 Mar 25]. Am J Hematol. 2020; 10.1002/ajh.25793. doi:10.1002/ajh.25793. PMID: 32212392.

Grein J, Ohmagari N, Shin D, Diaz G, Asperges E, Castagna A, Feldt T, Green G, Green ML, Lescure FX, Nicastri E, Oda R, Yo K, Quiros-Roldan E, Studemeister A, Redinski J, Ahmed S, Bernett J, Chelliah D, Chen D, Chihara S, Cohen SH, et al. Compassionate Use of Remdesivir for Patients with Severe Covid-19. N Engl J Med. 2020;382(24):2327-2336. doi:10.1056/NEJMoa2007016. PMID: 32275812.

Sanville B, Corbett R, Pidcock W, Hardin K, Sebat C, Nguyen MV, Thompson GR III, Haczku A, Schivo M, and Cohen SH. A Community Transmitted Case of Severe Acute Respiratory Distress Syndrome due to SARS CoV2 in the United States [published online ahead of print, 2020 Mar 30]. Clin Infect Dis. 2020; ciaa347. doi: 10.1093/cid/ciaa347. PMID: 32227197.

Koff A, Malinis M, Delgado S, Grant M, Ahmad T. Under Our Very Eyes. N Engl J Med. 2020 Mar 5;382(10):952-957. doi: 10.1056/NEJMcps1902835. PMID: 32130818.

Grein J, Ohmagari N, Shin D, Diaz G, Asperges E, Castagna A, Feldt T, Green G, Green ML, Lescure FX, Nicastri E, Oda R, Yo K, Quiros-Roldan E, Studemeister A, Redinski J, Ahmed S, Bernett J, Chelliah D, Chen D, Chihara S, Cohen SH, et al. Compassionate Use of Remdesivir for Patients with Severe Covid-19. N Engl J Med. 2020;382(24):2327-2336. doi: 10.1056/NEJMoa2007016. PMID: 32275812.

Koff A, Azar MM. Diagnosing peritoneal tuberculosis. BMJ Case Rep. 2020 Feb 6;13(2):e233131. doi: 10.1136/bcr-2019-233131. PMID: 32033999.

Desai AN, Kraemer MUG, Bhatia S, Cori A, Nouvellet P, Herringer M, Cohn EL, Carrion M, Brownstein JS, Madoff LC, Lassmann B. Real-time Epidemic Forecasting: Challenges and Opportunities. Health Secur. 2019 Jul/Aug;17(4):268-275. doi: 10.1089/hs.2019.0022. PMID: 31433279.

Desai AN, Ramatowski JW, Lassmann B, Holmes A, Mehtar S, Bearman G. Global infection prevention gaps, needs, and utilization of educational resources: A cross-sectional assessment by the International Society for Infectious Diseases. Int J Infect Dis. 2019 May;82:54-60. doi: 10.1016/j.ijid.2019.02.017. Epub 2019 Feb 19. PMID: 30794941.

Thompson GR III, Krois CR, Affolter VK, Everett AD, Varjonen EK, Sharon VR, Singapuri A, Dennis M, McHardy I, Yoo HS, Fedor DM, Wiederhold NP, Aaron PA, Gelli A, Napoli JL, White SD. Examination of Fluconazole-Induced Alopecia in an Animal Model and Human Cohort. Antimicrob Agents Chemother. 2019 Jan 29;63(2). e01384-18. doi: 10.1128/AAC.01384-18. PMID: 30455235.

Thompson GR III, Lewis JS II, Nix DE, Patterson TF. Current Concepts and Future Directions in the Pharmacology and Treatment of Coccidioidomycosis. Med Mycol. 2019 Feb 1;57(Supplement_1):S76-S84. doi: 10.1093/mmy/myy029. PMID: 30690601.

Heidari A, Quinlan M, Benjamin DJ, Laurence B, Mu A, Ngai T, Hoffman WJ, Cohen SH, McHardy I, Johnson R, Thompson GR III. Isavuconazole in the Treatment of Coccidioidal Meningitis. Antimicrob Agents Chemother. 2019 Feb 26;63(3):e02232-18. doi: 10.1128/AAC.02232-18. PMID: 30559134.

Davis MR, Nguyen MH, Donnelley MA, Thompson GR III. Tolerability of long-term fluconazole therapy. J Antimicrob Chemother. 2019 Mar 1;74(3):768-771. doi: 10.1093/jac/dky501. PMID: 30535104.

Wilson MR, Sample HA, Zorn KC, Arevalo S, Yu G, Neuhaus J, Federman S, Stryke D, Briggs B, Langelier C, Berger A, Douglas V, Josephson SA, Chow FC, Fulton BD, DeRisi JL, Gelfand JM, Naccache SN, Bender J, Dien Bard J, Murkey J, Carlson M, Vespa PM, Vijayan T, Allyn PR, Campeau S, Humphries RM, Klausner JD, Ganzon CD, Memar F, Ocampo NA, Zimmermann LL, Cohen SH, et al. Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis. N Engl J Med. 2019 Jun 13; 380(24):2327‐2340. doi: 10.1128/AAC.02232-18. PMID: 31189036.

Thompson GR III, Patterson TF. Novel approaches to antifungal therapy. Am J Transplant. 2018 Feb;18(2):287-288. doi: 10.1111/ajt.14616. PMID: 29206346.

Stewart ER, Eldridge ML, McHardy I, Cohen SH, Thompson GR III. Liposomal Amphotericin B as Monotherapy in Relapsed Coccidioidal Meningitis. Mycopathologia. 2018 Jun;183(3):619-622. doi: 10.1007/s11046-017-0240-7. PMID: 29340909.

Roe CC, Bowers J, Oltean H, DeBess E, Dufresne PJ, McBurney S, Overy DP, Wanke B, Lysen C, Chiller T, Meyer W, Thompson GR III, Lockhart SR, Hepp CM, Engelthaler DM. Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest. mSphere. 2018 Jan 17;3(1): e00499-17. doi: 10.1128/mSphere.00499-17. PMID: 29359190.

Hoffmann WJ, McHardy I, Thompson GR III. Itraconazole induced hypertension and hypokalemia: Mechanistic evaluation. Mycoses. 2018 May;61(5):337-339. doi: 10.1111/myc.12749. PMID: 29385285.

McHardy I, Romanelli A, Harris LJ, Opp G, Gaudino R, Torres A, Polage CR, Tuscano JM, Thompson GR III. Infectious risks associated with medicinal Cannabis: Potential implications for immunocompromised patients? J Infect. 2018 May;76(5):500-501. doi: 10.1016/j.jinf.2018.01.010. PMID: 29408325.

Skoog EC, Morikis VA, Martin ME, Foster GA, Cai LP, Hansen LM, Li B, Gaddy JA, Simon SI, Solnick JV. CagY-Dependent Regulation of Type IV Secretion in Helicobacter pylori Is Associated with Alterations in Integrin Binding. MBio. 2018 May 15;9(3). e00717-18. doi: 10.1128/mBio.00717-18. PMID: 29764950.

Shivakoti R, Ewald ER, Gupte N, Yang WT, Kanyama C, Cardoso SW, Santos B, Supparatpinyo K, Badal-Faesen S, Lama JR, Lalloo U, Zulu F, Pawar JS, Riviere C, Kumarasamy N, Hakim J, Pollard R, Detrick B, Balagopal A, Asmuth DM, Semba RD, Campbell TB, Golub J, Gupta A; NWCS 319 and ACTG PEARLS Study Team. Effect of baseline micronutrient and inflammation status on CD4 recovery post-cART initiation in the multinational PEARLS trial. Clin Nutr. 2018 May 29. S0261-5614(18)30199-7. doi: 10.1016/j.clnu.2018.05.014. PMID: 29885777.

Clancy CJ, Pappas PG, Vazquez J, Judson MA, Kontoyiannis DP, Thompson GR III, Garey KW, Reboli A, Greenberg RN, Apewokin S, Lyon GM III, Ostrosky-Zeichner L, Wu AHB, Tobin E, Nguyen MH, Caliendo AM. Detecting Infections Rapidly and Easily for Candidemia Trial, Part 2 (DIRECT2): A Prospective, Multicenter Study of the T2Candida Panel. Clin Infect Dis. 2018 May 17;66(11):1678-1686. doi: 10.1093/cid/cix1095. PMID: 29438475.

Jiang G, Nguyen D, Archin NM, Yukl SA, Méndez-Lagares G, Tang Y, Elsheikh MM, Thompson GR III, Hartigan-O'Connor DJ, Margolis DM, Wong JK, Dandekar S. HIV latency is reversed by ACSS2-driven histone crotonylation. J Clin Invest. 2018 Mar 1;128(3):1190-1198. doi: 10.1172/JCI98071. PMID: 29457784.

Santos Rocha C, Hirao LA, Weber MG, Méndez-Lagares G, Chang WLW, Jiang G, Deere JD, Sparger EE, Roberts J, Barry PA, Hartigan-O'Connor DJ, Dandekar S. Subclinical cytomegalovirus infection associates with altered host immunity, gut microbiota and vaccine responses. J Virol. 2018 Apr 18. pii: JVI.00167-18. doi: 10.1128/JVI.00167-18. PMID: 29669841.

Gaulke CA, Porter M, Han YH, Sankaran-Walters S, Grishina I, George MD, Dang AT, Ding SW, Jiang G, Korf I, Dandekar S. Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections. J Virol. 2014 Jun;88(11):6268-80. doi: 10.1128/JVI.00097-14. PMID: 29844248.

Vu K, Thompson GR III, Roe CC, Sykes JE, Dreibe EM, Lockhart SR, Meyer W, Engelthaler DM, Gelli A. Flucytosine resistance in Cryptococcus gattii is indirectly mediated by the FCY2-FCY1-FUR1 pathway. Med Mycol. 2018 Oct 1;56(7):857-867. doi: 10.1093/mmy/myx135. PMID: 29554336.

Matassoli FL, Leão IC, Bezerra BB, Pollard RB, Lütjohann D, Hildreth JEK, Arruda LB. Hydroxypropyl-Beta-Cyclodextrin Reduces Inflammatory Signaling from Monocytes: Possible Implications for Suppression of HIV Chronic Immune Activation. mSphere. 2018 Nov 7;3(6). pii: e00497-18. doi: 10.1128/mSphere.00497-18. PMID: 30404938.

McHardy IH, Dinh BN, Waldman S, Stewart E, Bays D, Pappagianis D, Thompson GR III. Coccidioidomycosis Complement Fixation Titer Trends in the Age of Antifungals. J Clin Microbiol. 2018 Nov 27;56(12). pii: e01318-18. doi: 10.1128/JCM.01318-18. PMID: 30257902.

Kullberg BJ, Viscoli C, Pappas PG, Vazquez J, Ostrosky-Zeichner L, Rotstein C, Sobel JD, Herbrecht R, Rahav G, Jaruratanasirikul S, Chetchotisakd P, Van Wijngaerden E, De Waele J, Lademacher C, Engelhardt M, Kovanda LL, Croos-Dabrera R, Fredericks C, Thompson GR III. Isavuconazole versus Caspofungin in the Treatment of Candidemia and Other Invasive Candida Infections: The ACTIVE Trial. Clin Infect Dis. 2018 Oct 5. doi: 10.1093/cid/ciy827. PMID: 30289478.

Lindsay J, Mudge S, Thompson GR III. Effects of Food and Omeprazole on a Novel Formulation of Super Bioavailability Itraconazole in Healthy Subjects. Antimicrob Agents Chemother. 2018 Nov 26;62(12). pii: e01723-18. doi: 10.1128/AAC.01723-18. PMID: 30297369.

Heidari A, Quinlan M, Benjamin DJ, Laurence B, Mu A, Ngai T, Hoffman WJ, Cohen SH, McHardy I, Johnson R, Thompson GR III. Isavuconazole in the Treatment of Coccidioidal Meningitis. Antimicrob Agents Chemother. 2018 Dec 17. pii: AAC.02232-18. doi: 10.1128/AAC.02232-18. PMID: 30559134.

Ling JL, Bays DJ, Thompson GR III, Moshiri A, Mannis MJ.  Favorable Outcome in Coccidioides endophthalmitis – a Combined Medical and Surgical Treatment Approach. Cornea. 2017 Nov;36(11):1423-1425. doi: 10.1097/ICO.0000000000001353. PMID: 28872517.

Thompson GR III, Barker B, Wiederhold NP.  Large Scale Evaluation of in vitro Amphotericin B, Triazole, and Echinocandin activity against Coccidioides species from United States Institutions. Antimicrobial Agents and Chemotherapy. 2017 April 61(4):e02634-16; 1-4. doi: 10.1128/AAC.02634-16. PMID: 28096163.

Thompson GR III, Blair J, Wang S, Bercovitch R, Bolaris M, Van Den Akker D, Lopez R, Heidari A, Catanzaro A, Cadena J, Chin-Hong P, Spellberg B, Johnson R. Adjunctive Corticosteroid Therapy in the Treatment of Coccidioidal Meningitis. Clin Infect Dis. 2017 Jul 15;65(2):338-341. doi: 10.1093/cid/cix318. doi: 10.1093/cid/cix318. PMID: 28419259.

Jiang G, Santos-Rocha C, Hirao L, Mendes E, Tang Y, Thompson GR III, Wong J, and Satya Dandekar. HIV exploits anti-viral host innate GCN2-ATF4 signaling for establishing its own replication early in infection. mBio. May 2017 2;8(3):e01518-16; 1-16. doi: 10.1128/mBio.01518-16. PMID: 28465428.

Thompson GR III, Chang D, Wittenberg RR, McHardy I, Semrad A. Posaconazole Induced Hypertension and Hypokalemia: In vivo 11β-hydroxysteroid dehydrogenase Inhibition.  Antimicrobial Agents and Chemotherapy. 2017 August 61(8):e00760-17; 1-4. doi: 10.1128/AAC.00760-17. PMID: 28533238.

Hansen LM, Gideonsson P, Canfield DR, Boren T, Solnick JV. Dynamic Expression of the BabA Adhesin and its BabB Paralog During Helicobacter pylori Infection in Rhesus Macaques. Infect Immun. 2017 May 23;85(6). pii: e00094-17. doi: 10.1128/IAI.00094-17. PMID: 28396320.

Kable ME, Hansen GLM, Styer CM, Deck SL, Rakhimova O, Shevtsova A, Eaton KA, Martin ME, Gideonsson P, Borén T, and Solnick JV. Host Determinants of Expression of the Helicobacter pylori BabA Adhesin. Sci Rep. 2017 Apr 18;7:46499. doi: 10.1038/srep46499. PMID: 28418004.

Draper JL, Hansen LM, Bernick D, Abedrabbo S, Underwood JG, Kong N, Huang CB, Weiss AM, Weimer BC, van Vliet AHM, Pourmand N, Solnick JV [co-corresponding author], Karplus, K, Ottemann, KM. Fallacy of the unique genome: Sequence diversity within single Helicobacter pylori strains. MBio. 2017 Feb 21;8(1): e02321-16. doi: 10.1128/mBio.02321-16. PMID: 28279347.

Bugaytsova J, Chernov YA, . . . Solnick JV . . . and Boren T. Helicobacter pylori Adapts to Chronic Infection and Gastric Disease via pH-Responsive BabA-Mediated Adherence. Cell Host Microbe. 2017 Mar 8;21(3):376-389. doi: 10.1016/j.chom.2017.02.013. 

Brown J. Confusion and seizures in a stem cell transplant recipient. Am J Transplant. 2017 May;17(5):1418-1420. doi: 10.1111/ajt.14269. 

Serrano-Villar S, Sainz T, Ma ZM, Utay NS, Wook-Chun T, Mann S, Kashuba AD, Siewe B, Albanese A, Troia-Cancio P, Sinclair E, Somasunderam A, Yotter T, Deeks SG, Landay A, Pollard RB, Miller CJ, Moreno S, Asmuth DM. Correction: Effects of Combined CCR5/Integrase Inhibitors-Based Regimen on Mucosal Immunity in HIV-Infected Patients Naïve to Antiretroviral Therapy: A Pilot Randomized Trial. PLoS Pathog. 2017 May 3;13(5):e1006368. doi: 10.1371/journal.ppat.1006368. PMID: 28467485.

Rockstroh JK, Plonski F, Bansal M, Fätkenheuer G, Small CB, Asmuth DM, Pialoux G, Zhang-Roper R, Wang R, Pineda JA, Heera J. Hepatic safety of maraviroc in patients with HIV-1 and hepatitis C and/or B virus: 144-week results from a randomized, placebo-controlled trial. Antivir Ther. 2017;22(3):263-269. doi: 10.3851/IMP3116. PMID: 27924779.

Wan D, Yang J, Mann S, Garcia JC, Troia-Cancio P, Yotter T, Pollard RB, Hammock BD, Asmuth DM. Impact of serum-derived bovine immunoglobulin (SBI) on vitamin D metabolite levels in subjects with HIV enteropathy measured by a novel sensitive method using mass spectrometry. In: Abstracts for the 9th IAS Conference on HIV Pathogenesis, Treatment & Prevention. Paris, France. July 23-26, 2017. Abstract MOPEB0364.

Garrett KL, Mann S, Sainz-Costa T, Serrano-Villar S, Garcia JC, Troia-Cancio P, Li X-D, Pollard R, Yotter T, Kashuba ADM, Asmuth D. Exposure of Darunavir (DRV), Ritonavir (RTV), Emtricitabine (FTC), and Tenofovir (TFV) in Duodenal Tissue: Implications of Gastrointestinal (GI) Immune Reconstitution Among HIV-Infected Patients Undergoing Antiretroviral Treatment. In: Abstracts for the 9th IAS Conference on HIV Pathogenesis, Treatment & Prevention. Paris, France. July 23-26, 2017. Abstract MOPEG0330.

Serrano-Villar S, Sainz T, Ma ZM, Utay NS, Wook-Chun T, Mann S, Kashuba AD, Siewe B, Albanese A, Troia-Cancio P, Sinclair E, Somasunderam A, Yotter T, Deeks SG, Landay A, Pollard RB, Miller CJ, Moreno S, Asmuth DM. Correction: Effects of Combined CCR5/Integrase Inhibitors-Based Regimen on Mucosal Immunity in HIV-Infected Patients Naïve to Antiretroviral Therapy: A Pilot Randomized Trial. PLoS Pathog. 2017 May 3;13(5):e1006368. PMID: 28467485.

Barrozo RM, Hansen LM, Lam AM, Skoog EC, Martin ME, Cai LP, Lin Y, Latoscha A, Suerbaum S, Canfield DR, and Solnick JV. CagY Is an Immune-Sensitive Regulator of the Helicobacter pylori Type IV Secretion System. Gastroenterology. 2016 Dec;151(6):1164-1175.e3. PMID: 27569724 [Featured on the Cover].

Skoog, EC, Deck, SL, Entwistle, HD, Hansen, LM, and Solnick JV. Characterization of the Cag pathogenicity island in Helicobacter pylori from naturally infected rhesus macaques. FEMS Microbiol Lett. 2016 Dec;363(24). pii: fnw275. PMID: 27940463.

Moonens K, Gideonsson P, . . . Solnick JV, and Remut H. Structural Insight into Polymorphic ABO Glycan Binding by Helicobacter pylori.Cell Host Microbe. Author manuscript; available in PMC 2017 Jan 13. Published in final edited form as: Cell Host Microbe. 2016 Jan 13; 19(1): 55–66.  PMCID: PMC4793151.

Serrano-Villar S, Sainz T, Ma Z-M, Utay NS, Chun T-W, Mann S, Kashuba AD, Siewe B, Albanese A, Troia-Cancio P, Sinclair E, Somasunderam A, Yotter T, Deeks SG, Landay A, Pollard RB, Miller CJ, Moreno S, Asmuth DM. Correction: Effects of Combined CCR5/Integrase Inhibitors-Based Regimen on Mucosal Immunity in HIV-Infected Patients Naïve to Antiretroviral Therapy: A Pilot Randomized Trial. PLoS Pathog. 2016 Mar; 12(3): e1005540. Published online 2016 Mar 25. Corrects: PLoS Pathog. 2016 Jan; 12(1): e1005381. PMID: 28467485.

Asmuth DM, Utay NS, Pollard RB. Pegylated Interferon alfa-2a for the Treatment of HIV Infection. Expert Opin Invest Drugs. 2016 Jan 4:1-9. PMID: 26667398.

Taylor J, Carr-Lopez S, Robinson A, Malmstrom R, Duncan K, Maniar A, Del Re A, Carmichael J.  “Determinants of Treatment Eligibility in Veterans with Hepatitis C Viral Infection.” Clin Ther 2016 Nov; 39(1) 130-137. 

Nand P, Wilson MD, Cohen SH, Brown J. Curbing antimicrobial resistance: Do physicians receive adequate education about antibiograms? J Infect. 2016;72(1):127-9.

Bui C, Zhu E, Donnelley M, Wilson M, Morita M, Cohen SH, Brown J. Antimicrobial stewardship programs that target only high-cost, broad-spectrum antimicrobials miss opportunities to reduce Clostridium difficile infections. Am J Infect Control. 2016;44(12):1684-86.

Brown J. Can multiplex PCR testing improve the diagnosis and treatment of community-acquired pneumonia? Review of Gadsby et al. Clin Infect Dis. 2016; 62:817-823. Infectious Diseases Society of America Journal Club. April 2016. http://newsmanager.commpartners.com/idsa/issues/2016-04- 21/24.html.

Maertens JA, Raad I, Marr KA, Patterson TF, Kontoyiannis DP, Cornely OA, Bow EJ, Rahav G, Neofytos D, Aoun M, Baddley JW, Giladi M, Heinz W, Herbrecht R, Hope W, Karthaus M, Lee DG, Lortholary O, Morrison VA, Oren I, Selleslag D, Shoham S, Supparatpinyo K, Thompson GR III, Lee M, Maher R, Schmitt-Hofmann AH, Zeiher B, Ullmann AJ.  Isavuconazole versus Voriconazole for Primary Treatment of Invasive Mold Disease Caused by Aspergillus and Other Filamentous Fungi (The SECURE study). Lancet. 2016 Feb 20;387(10020):760-9. PMID: 26684607.

Stockamp N, Thompson GR III. Coccidioidomycosis. Infectious Disease Clinics of North America. 2016 Mar;30(1):229-46. PMID: 26739609.

Cadena J, Thompson GR III, Patterson TF. Invasive Aspergillosis: Current Strategies for Diagnosis and Management. Infectious Disease Clinics of North America. 2016 Mar;30(1):125-42. PMID: 26897064.

Marty FM, Ostrosky-Zeichner L, Cornely OA, Mullane KM, Perfect JR, Thompson GR III, Alangaden GJ, Brown JM, Fredricks JN, Heinz WJ, Herbrecht R, Klimko N, Klyasova G, Maertens JA, Melinkeri SR, Oren I, Pappas PG, Ráčil Z, Rahav G, Santos R, Schwartz S, Vehreschild J, Young JH, Chetchotisakd P, Jaruratanasirikul S, Kanj SS, Engelhardt M, Kaufhold A, Ito M, Lee M, Sasse C, Maher R, Zeiher B, Vehreschild MJGT, for the VITAL and FungiScope Mucormycosis Investigators. Isavuconazole Treatment for Mucormycosis. The Lancet Infectious Disease. 2016 Jul;16(7):828-37. PMID: 26969258.

Engelthaler DM, Roe CC, Hepp, CM, Teixeira M, Driebe EM, Schupp JM, Gade L, Waddell V, Komatsu K, Arathoon E, Logemann H, Thompson GR III, Chiller T, Barker B, Litvintseva AP, Keim P.  Coccidioides whole population genome SNP analysis reveals local population structure and patterns of hemispheric dispersal. Manuscript accepted for publication to mBio.  2016 Apr 26;7(2):e00550-16. PMID: 27118594.

Schwartz IS, Kenyon C, Thompson GR III. Endemic Mycoses: What’s new about old diseases? Current Clinical Microbiology Reports. 2016 3:71–80.

Thompson GR III, Rendon A, Santos R, Queiroz-Telles F,  Ostrosky-Zeichner L, Zeiher B, Maher R, Lee M, Kovanda L, Vazquez J, Cornely OA, Perfect JR. Isavuconazole Treatment of Cryptococcosis and Dimorphic Mycoses. Clinical Infectious Diseases. 2016 Aug 1;63(3):356-62. PMID: 27169478.

Donnelley MA, Zhu ES, Thompson GR III. Isavuconazole in the Treatment of Invasive Aspergillosis and Mucormycosis Infections. Infection and Drug Resistance. 2016 Jun 2;9:79-86. PMID:  27330318.

Patterson TF, Thompson GR III, Denning D, Fishman F, Hadley S, Herbrecht R, Kontoyiannis DP, Marr KA, Morrison VA, Nguyen MH, Segal BH, Steinbach WJ, Stevens DA, Walsh TJ, Wingard JR, Young J, Bennett JE.  Executive Summary: Practice Guidelines for the Diagnosis and Management of Aspergillosis: 2016 Update by the Infectious Diseases Society of America. Clinical Infectious Diseases. 2016 Aug 15;63(4):433-42. PMID: 27481947.

Patterson TF, Thompson GR III, Denning D, Fishman F, Hadley S, Herbrecht R, Kontoyiannis DP, Marr KA, Morrison VA, Nguyen MH, Segal BH, Steinbach WJ, Stevens DA, Walsh TJ, Wingard JR, Young J, Bennett JE.  Practice Guidelines for the Diagnosis and Management of Aspergillosis: 2016 Update by the Infectious Diseases Society of America. PMID:  27365388.

Vishkautsan P, Papich MG, Thompson GR III, Sykes JE.  Pharmacokinetics of voriconazole after intravenous and oral administration to healthy cats. American Journal of Veterinary Research. 2016 Sep;77(9):931-9. PMID: 27580104.

Sykes JE, Hodge G, Gelli A, Yang ML, Thompson GR III. In vivo Development of Fluconazole Heteroresistance in Cryptococcus gattii. Medical Mycology. 2017 Jun 1;55(4):396-401.  PMID: 28339594.

Stewart ER, Thompson GR III. Treatment of Primary Pulmonary Aspergillosis: An assessment of the evidence. Journal of Fungi. 2016 2(25):1-9.

Stewart ER, Thompson GR III.  Update on the Epidemiology of Coccidioidomycosis.  Current Fungal Infection Reports.  2016 Oct 10:141-146.

DeRiemer K, Thompson GR III. Lung Microbiomes – new frontiers? American Journal of Respiratory and Critical Care Medicine. 191(8):870-1.  

Thompson GR III, Stevens DA, Clemons KV, Fierer J, Johnson RH, Sykes J, Rutherford G,Peterson M, Taylor JW, Chaturvedi V. Call for a California Coccidioidomycosis Consortium to Face the Top Ten Challenges Posed by a Recalcitrant Regional Disease. Mycopathologia. 179(1-2):19. 

Baumann R, Rogers A, Hamdan H, Burger H, Weiser B, Gao W, Anastos K, Young M, Meyer WA III, Pesano R, Kagan R. Determination of HIV-1 coreceptor tropism using proviral  DNA in women  before and after viral suppression. AIDS Research and Therapy. 12:11. 

Thompson GR III, Gomez BL. Histoplasma, Blastomyces, Coccidioides and other dimorphic fungi causing systemic mycoses. Manual of Clinical Microbiology (ASM Press) 11th Ed. 2015, Available at: http://www.asmscience.org/content/book/10.1128/9781555817381.

Gerding DN, Meyer T, Lee C, MD, Cohen SH, Murthy UK, Poirier A MD, Van Schooneveld TC, Pardi DS, Ramos A, Barron MA, Chen H, Villano S. Administration of Spores of Nontoxigenic Clostridium difficile Strain M3 for Prevention of Recurrent C difficile Infection: A Randomized Clinical Trial. Journal of the American Medical Association. 313(17):1719-1727. 

Nand P, Wilson MD, Cohen SH, Brown J. Curbing antimicrobial resistance: Do physicians receive adequate education about antibiograms? Journal of Infection. 72(1):127-129. 

Hodge G, Cohen SH, Thompson GR III. In vitro interactions between amphotericin B and hydrocortisone: potential implications for intrathecal therapy. Medical Mycology. 53(7):749-753.

Polage CR, Gyorke CE, Kennedy MA, Leslie JL, Chin DL, Wang S, Nguyen HH, Huang B, Tang YW, Lee LW, Kim K, Taylor S, Romano PS, Panacek EA, Goodell PB, Solnick JV, Cohen SH. Overdiagnosis of Clostridium difficile Infection in the Molecular Test Era. Journal American Medical Association Internal Medicine. 175(11):1792-1801.

Brown J, Li CS, Giordani M, Shahlaie K, Klineberg EO, Tripet-Diel JR, Ihara MS, and Cohen SH. Swabbing Surgical Sites Does Not Improve the Detection of Staphylococcus aureus Carriage in High-Risk Surgical Patients. Surgical Infections. 16:523-525.

Gupta MP, Coombs P, Prockop SE, Hasan AA, Doubrovina E, Cohen SH, Park SS, Kiss S. Treatment of Cytomegalovirus Retinitis With Cytomegalovirus‐Specific T‐Lymphocyte Infusion. Ophthalmic Surg Lasers Imaging Retina. 46(1):80–82.

Bauer G, Anderson JS. Stem cell transplantation in the context of HIV – how can we cure HIV infection? Expert Review of Clinical Immunology. 10(1):107-116. 

Barclay SL, Yang Y, Zhang S, Fong R, Barraza A, Nolta JA, Torbett BE, Abedi M, Bauer G, Anderson JS. Safety and Efficacy of a tCD25 Preselective Combination Anti-HIV Lentiviral Vector in Human Hematopoietic Stem and Progenitor Cells. Stem Cells. 33(3):870-879. 

Konadu KA, Anderson JS, Huang MB, Ali SA, Powell MD, Villinger F, Bond VC. Hallmarks of HIV-1 pathogenesis are modulated by Nef’s Secretion Modification Region. Journal of AIDS & Clinical Research. 6(7):476. 

Tenforde MW, Gupte N, Dowdy DW, Asmuth DM, Balagopal A, Pollard RB, Sugandhavesa P, Lama JR, Pillay S, Cardoso SW, Pawar J, Santos B, Riviere C, Mwelase L, Kanyama C, Kumwenda J, Hakim JG, Kumarasamy N, Bollinger R, Semba RD, Campbell TB, Gupta A, for the ACTG PEARLS and NWCS 319 Study Group. C-Reactive Protein (CRP), Interferon Gamma-Inducible Protein 10 (IP-10), and Lipopolysaccharide (LPS) Are Associated with Risk of Tuberculosis after Initiation of Antiretroviral Therapy in Resource-Limited Settings. PloS One. 10(2):e0117424. 

Balagopal A, Asmuth DM, Yang WT, Campbell TB, Gupte N, Smeaton L, Kanyama C, Grinsztejn B, Santos B, Supparatpinyo K, Badal-Faesen S, Lama JR, Lalloo UG, Zulu F, Pawar JS, Riviere C, Kumarasamy N, Hakim J, Li XD, Pollard RB, Semba RD, Thomas DL, Bollinger RC, Gupta A, for the ACTG PEARLS and NWCS 319 Study team. Pre-cART Elevation of CRP and CD4+ T-Cell Immune Activation Associated With HIV Clinical Progression in a Multinational Case–Cohort Study. Journal of Acquired Immune Deficiency Syndromes. 70(2):163-171. 

Lee CY, Thompson GR III, Hastey CJ, Hodge GC, Lunetta JM, Pappagianis D, Heinrich V. Coccidioides Endospores and Spherules Draw Strong Chemotactic, Adhesive, and Phagocytic Responses by Individual Human Neutrophils. PloS One. 10(6):e0129522. 

Benedict K, Thompson GR III, Deresinski S, Chiller T. Mycotic Infections Acquired outside Areas of Known Endemicity, United States. Emerging Infectious Diseases. 21(11):1935-941. 

Pollard RB, Rockstroh JK, Pantaleo G, Asmuth DM, Peters B, Lazzarin A, Gatell J, Ellefsen-Lavoie K, Podzamczer D, Van Lunzen J, Arastéh K, Schürmann D, Clotet B, Hardy D, Mitsuyasu R, Moyle G, Plettenberg A, Fisher M, Fätkenheuer G, Fischl M, Taiwo B, Baksaas I, Jolliffe D, Persson S, Jelmert Ø, Hovden A-O, Sommerfelt MA, Wendel-Hansen V, Sørensen B. The safety and efficacy of the peptide-based therapeutic vaccine for HIV-1, Vacc-4x: a randomised, double-blind, placebo-controlled phase 2 trial. Lancet Infect Dis. 14(4): 291-300. 

Sulkowski MS, Naggie S, Lalezari J, Fessel WJ, Mounzer W, Shuhart M, Luetkemeyer AF, Asmuth D, Gaggar A, Ni L, Svarovskaia E, Brainard DM, Symonds WT, Subramanian GM, McHutchison JG, Rodriguez-Torres M, Dieterich D. Sofosbuvir and Ribavirin for Hepatitis C in Patients With HIV Coinfection. JAMA. 312(4): 353-361. 

Grant PM, Komarow L, Sanchez A, Sattler FR, Asmuth DM, Pollard RB, Zolopa AR. Clinical and Immunologic Predictors of Death During an Acute Opportunistic Infection: Results from ACTG A5164. HIV Clin Trials. 15(4): 133-139. 

Halilovic J, Christensen C, and Nguyen HH. Managing an outpatient parenteral antibiotic therapy team: challenges and solutions. Therapeutics and Clinical Risk Management. 10: 459-465. 

Espinel-Ingroff A, Chowdhary A, Gonzalez GM, Guinea J, Hagen F, Meis J, Thompson GR III, Turnidge J. Isavuconazole MIC Distributions and Epidemiological Cutoff Values for the Cryptococcus neoformans-Cryptococcus gattii complex by the CLSI Broth Microdilution Method (M27-A3 document): A Multicenter Study. Antimicrobial Agents and Chemotherapy. 179(1):1-9. 

Najafi S, Aronowitz, P, Thompson GR III. The Habit Tic: onychotillomania. Journal of General Internal Medicine. 30(2):264. 

Eldridge M, Chambers CJ, Sharon VR, Thompson GR III. Fungal infections of the skin and nail: new treatment options. Expert Review of Anti-infective Therapy. (11):1389-405.

Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Engelthaler DM, Driebe E, Roe C, Keim P, Ralston C, Wohrle R, Goldoft M, Thompson GR III, Chiller T, Brandt M. Valley Fever: Finding new places for an old disease: Coccidioides immitis found in Washington State soil associated with recent human infection. Clinical Infectious Diseases. 60(1):e1-3. 

Engelthaler DM, Hicks N, Gillece J, Roe C, Schupp JM, Driebe EM, Gilgado F, Carriconde F, Trilles L, Firacative C, Ngamskulrungroj P, Castaneda E, Lazera MDS, Melhem M, Perez-Bercoff A, Huttlley G, Sorrell T, Voelz K, My RC, Fisher M, Thompson GR III, Lockhart S,  Keim P, Meyer W. Cryptococcus gattii in North American Pacific Northwest:  whole population genome analysis provides insights into species evolution and dispersal. mBio. 5(4). 

Vu K, Tham R, Uhrig JP, Thompson GR III, Na Pombejra S, Jamklnag M, Mautos JM, Gelli A. Invasion of the central nervous system by Cryptococcus neoformans requires a secreted fungal metalloprotease. mBio. 5(3):e01101-14.

Jiang G, Mendes EA, Kaiser P, Sankaran-Walters S, Tang Y, Weber MG, Melcher GP, Thompson GR III, Tanuri A, Pianowski LF, Wong JK, Dandekar S. Reactivation of HIV latency by a newly modified Ingenol derivative via PKCδ-NFκB signaling. AIDS. 28(11):1555-66. 

Thompson GR III, Albert N, Hodge G, Wilson MD, Sykes JE, Bays DJ, Firacative C, Meyer W, Kontoyiannis DP. Phenotypic Differences of Cryptococcus genotypes:  implications for virulence in a Drosophila model of infection. Infection and Immunity. 82(7):3058-3065. 

Singer LM, Meyer W, Firacative C, Thompson GR III, Samitz E, Sykes JE. Antifungal Drug Susceptibility and Phylogenetic Diversity Among Cryptococcus Isolates from Dogs and Cats in North America. Journal of Clinical Microbiology. 52(6):2061-70.  

Lewis JS II, Lepak AJ, Thompson GR III, Craig WA, Andes DR, Sabol-Dzintars KE, Jorgensen JH. Failure of Clindamycin to Eradicate Infection with Beta-Hemolytic Streptococci Inducibly Resistant to Clindamycin in an Animal Model and in Human Infections. Antimicrobial Agents and Chemotherapy. 58(3):1327-31. 

Weber S, Weiser B, Kemal KS, Burger H, Ramirez CM, Korn K, Anastos K, Kaul R, Kovacs C, Doerfler W. Epigenetic analysis of HIV-1 proviral genomes from infected individuals: predominance of unmethylated CpG's. Virology. 449: 181-9.  

Brown J, Burger H, Weiser B, Pollard RB, Li XD, Clancy LJ, Baumann RE, Rogers AA, Hamdan HB, Pesano RL, Kagan RM. A genotypic HIV-1 proviral DNA coreceptor tropism assay: characterization in viremic subjects. AIDS research and therapy. 11: 14. 

Lippincott Williams and Wilkins, Thompson GR III, Patterson TF. Antifungal Drugs: Mechanisms of Action, Drug Resistance, Susceptibility Testing, and Assays of Activity in Biological Fluids. In: Antibiotics in Laboratory Medicine 6th Ed.

Safdar N, Anderson DJ, Braun BI, Carling P, Cohen S, Donskey C, Drees M, Harris A, Henderson DK, Huang SS, Juthani-Mehta M, Lautenbach E, Linkin DR, Meddings J, Miller LG, Milstone A, Morgan D, Sengupta S, Varman M, Yokoe D, Zerr DM. The evolving landscape of healthcare-associated infections: Recent advances in prevention and a road map for research. Infect Control Hosp Epidemiol. 35:480-493. 

Eldridge M, Cohen S. Cutaneous Manifestations of Infection in Returning Travelers. Current Infectious Disease Report. 16:426. 

Gericota B, Anderson JS, Mitchell G, Borjesson DL, Sturges BK, Nolta JA, Sieber-Blum M. Canine Epidermal Neural Crest Stem Cells: Characterization and Potential as Therapy Candidate for a Large Animal Model of Spinal Cord Injury. Stem Cells Translational Medicine. 3:334-345. 

Byambaa A, Nuerdem A, Zhang W, Asmuth DM, Abbuthalha A, Li X-D, Dotterweich W, Pollard RB, Berglund L. HIV Disease Activity as a Modulatory of Lipoprotein(a) and Allele-Specific Apolipoprotein(a) Levels. Arterioscler Thromb Vasc Biol, 33(2): 387-392. 

Hayes TL, Asmuth DM, Critchfield JW, Knight TH, McLaughlin BE, Yotter T, McConnell DH, Garcia J-C, Pollard RB, Shacklett BL. Impact of Highly Active Antiretroviral Therapy Initiation on CD4+ T-cell Repopulation in Duodenal and Rectal Mucosa. AIDS. 27(6): 867-877. 

Asmuth DM, Ma Z-M, Albanese A, Sandler NG, Devaraj S, Knight TH, Flynn NM, Yotter T, Garcia J-C, Tsuchida E, Wu T-T, Douek DC, Miller CJ. Oral Serum-Derived Bovine Immunoglobulin Improves Duodenal Immune Reconstitution and Absorption Function in Patients with HIV Enteropathy. AIDS. 27(14): 2207-2217.

Maniar A, Ellis CE, Asmuth D, Pollard RB, Rutledge J. HIV Infection and Atherosclerosis: Evaluating the Drivers of Inflammation. European Journal of Preventive Cardiology. 20(5): 720-728. 

Rodriguez B, Asmuth DM, Matining R, Spritzler J, Jacobson J, Mailliard R, Li X-D, Read S, Martinez A, Tenorio A, Lori F, Lisziewicz J, Yesmin S, Rinaldo CR, Pollard R. Safety, Tolerability and Immunogenicity of Repeated Doses of DermaVir, a Candidate Therapeutic HIV Vaccine, in HIV Infected Patients Receiving Combination Antiretroviral Therapy. Results of the ACTG 5176 Trial. 64(4): 351-359. 

Goldenholz DM, Mehra N, Dahlin B, Cohen SH, and Wheelock VL. Teaching Neuroimages: Fungus in the brain: Coccidioidomycosis meningoencephalitis. Neurology. 80: e82. 

Thompson GR, Sharma S, Bays DJ, Pruitt R, Engelthaler DM, Bowers J, Driebe EM, Davis M, Libke R, Cohen SH, and Pappagianis D. Coccidioidomycosis: adenosine deaminase levels, serologic parameters, culture results, and polymerase chain reaction testing in pleural fluid. Chest. 143(3): 776-781. 

Thompson GR III, Bays D, Taylor SL, Cohen SH, and Pappagianis D. Association between serum 25-hydroxyvitamin D level and type of coccidioidal infection. Medical Mycology, 51(3): 319-323. 

Tehrani DM, Russell D, Brown J, Boynton-Delahanty K, Quan K, Gibbs L, Braddock G, Zaroda T, Koopman M, Thompson D, Nichols A, Cui E, Liu C, Cohen S, Rubin Z, Pegues D, Torriani F, Datta R, and Huang SS. Discord among performance measures for central line-associated bloodstream infection. Infection Control and Hospital Epidemiology, 34(2): 176-183. Publications Page 8 of 21. 

Lee L and Cohen SH. Community-Acquired Clostridium difficile Infection: An Emerging Problem. Current Emergency and Hospital Medicine Reports, 1(3): 149-153. 

Rabe IB, Schwartz BS, Farnon EC, Josephson SA, Webber AB, Roberts JP, de Mattos AM, Gallay BJ, van Slyck S, Messenger SL, Yen CJ, Bloch EM, Drew CP, Fischer M, Glaser CA, and Cohen SH (in the WNV Transplant Investigation Team). Fatal transplant-associated west nile virus encephalitis and public health investigation-California, 2010. Transplantation, 96(5): 463-468. 

Moreland C, Latimore D, Sen A, Arato N, Zazova P. Deafness Among Physicians and Trainees: A National Survey. Academic Medicine, 88(2): 224-232. 

Gultepe E, Green JP, Nguyen H, Adams J, Albertson T, Tagkopoulos I. From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system. Journal of the American Medical Informatics Association, epub ahead of print.

Shaw JM, Hunt PW, Critchfield JW, McConnell DH, Garcia JC, Pollard RB, Somsouk M, Deeks S, Shacklett BL. HIV+ Viremic Slow Progressors Maintain Low Regulatory T-Cell Numbers in Rectal Mucosa but Exhibit High T-cell Activation. AIDS Research and Human Retroviruses, 29(1): 172-177. 

Allen ME, Brown J, Karakas SE, and Pollard RB. Refractory AIDS cholangiopathy: metabolic complications and the role of plasmapheresis. AIDS, 27(7): 1193–1194. 

Kalayjian RC, Spritzler J, Matining RM, Fiscus SA, Gross BH, Francis IR, Pollard RB, Lederman MM, and Landay A. Older HIV-infected patients on antiretroviral therapy have B-cell expansion and attenuated CD4 cell increases with immune activation reduction. AIDS, 27(10): 1563-1571. 

Nagy LH, Grishina I, Macal M, Hirao LA, Hu WK, Sankaran-Walters S, Gaulke CA, Pollard RB, Brown J, Suni M, Baumler AJ, Ghanekar S, Marco ML,  Dandekar S. Chronic HIV infection enhances the responsiveness of antigen presenting cells to commensal lactobacillus. PLoS ONE, 8(8): e72789. Publications Page 29 of 78.

Rodriguez B, Asmuth DM, Matining RM, Spritzler J, Jacobson JM, Mailliard RB, Li XD, Martinez AI, Tenorio AR, Lori F, Lisziewicz J, Yesmin S, Rinaldo CR, and Pollard RB. Safety, tolerability, and immunogenicity of repeated doses of dermavir, a candidate therapeutic HIV vaccine, in HIV-infected patients receiving combination antiretroviral therapy: results of the ACTG 5176 trial. JAIDS, 64(4): 351-359. 

Gyorke C, Wang S, Leslie J, Cohen S, Solnick JV, Polage CR. Evaluation of fecal C. difficile load and limit of detection during a prospective comparison of two molecular tests, the illumigene C. difficile and Xpert C. difficile/Epi. Journal of Clinical Microbiology. 51: 278-780. 

Barrozo RM, Cooke CL, Hansen LM, Lam AM, Gaddy JA, Johnson EM, Cariaga TA, Suarez G, Peek RM, Cover TL, and Solnick JV. Functional plasticity in the type IV secretion system of Helicobacter pylori. PLoS Pathogens. 2(e1003189). 

Cooke CL, Torres J, Solnick JV. Biomarkers of Helicobacter pyloriassociated gastric cancer. Gut Microbes. 4(6). 

Zhu ES, Thompson GR III, Kreulen C, Giza E. Amphotericin B-impregnated Bone Cement to Treat Refractory Coccidioidal Osteomyelitis. Antimicrobial Agents and Chemotherapy. 57(12):6341-3.  

Thompson GR III, Kontoyiannis DP, Patterson TF. Management of an Outbreak: Real-World experience in the midst of an Exserohilum meningitis outbreak. Journal of the American Medical Association. 309(23):2493-5. 

Brown J, Benedict K, Park BJ, Thompson GR III. Coccidioidomycosis: epidemiology. Clinical Epidemiology. 5:185-97. 

Thompson GR III, Wang S, Bercovitch R, Bolaris M, Akker DVD, Taylor S, Lopez R, Catanzaro A, Cadena J, Chin-Hong P, Spellberg B. Routine CSF Analysis in Coccidioidomycosis is Not Required. PLOS One. 8(5):e64249; 1-5. 

Marsden-Haug N, Goldoft M, Ralston C, Limaye AP, Chua J, Hill H, Jecha L, Thompson GR III, Chiller T. Coccidioidomycosis Acquired in Washington State. Clinical Infectious Diseases. 56(6):847-50.  

Thompson GR III, Sharma S, Bays DJ, Pruitt R, Engelthaler DM, Bowers J, Driebe EM, Davis M, Libke R, Cohen SH, Pappagianis D. Pleural Effusions Caused by Coccidioidomycosis:  ADA levels, serologic parameters, culture results and PCR testing. CHEST. 143(3):776-81. 

Chang C, Gershwin E, Thompson GR III. Fungal Disease of the Nose and Sinuses: An Updated Overview. Current Allergy and Asthma Reports. 13(2):152-61.  

Thompson GR III, Bays DJ, Taylor SL, Cohen SH, Pappagianis D. Association Between Serum 25-Hydroxyvitamin D Level and Type of Coccidioidal Infection. Medical Mycology. 51(3):319-23. 

Watanabe SM, Chen MH, Khan M, Ehrlich L, Kemal KS, Weiser B, Shi B, Chen C, Powell M, Anastos K, Burger H, Carter CA. The S40 residue in HIV-1 Gag p6 impacts local and distal budding determinants, revealing additional late domain activities. Retrovirology. 10: 143. 

Kemal KS, Anastos K, Weiser B, Ramirez CM, Shi Q, Burger H. Molecular epidemiology of HIV type 1 subtypes in Rwanda. AIDS research and human retroviruses. 29(6): 957-62. 

Hospenthal DR, Thompson GR III, Oppenheimer AP, Arsura EL. Coccidioidomycosis. Medscape Reference. Updated September 13, 2013. Available at: http://emedicine.medscape.com/article/215978-clinical.

Cadena J, Thompson GR III, Patterson TF. Fungi. APIC Text of Infection Control and Epidemiology 4th Ed. 2014. Available at: http://apic.org/APICStore/Products/Product?id=SLSTXT14